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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs6542956 chr2:101103957 C/A LOC285359 chr3:101431278-101432259:+ 0.33 6.48 2.29E-10 Box Plot
THCA rs6542957 chr2:101104305 C/T LOC285359 chr3:101431278-101432259:+ 0.33 6.48 2.29E-10 Box Plot
THCA rs6542958 chr2:101106455 T/C LOC285359 chr3:101431278-101432259:+ 0.33 6.49 2.18E-10 Box Plot
THCA rs6542959 chr2:101108078 A/G LOC285359 chr3:101431278-101432259:+ 0.36 6.94 1.26E-11 Box Plot
THCA rs6542960 chr2:101109287 T/C LOC285359 chr3:101431278-101432259:+ 0.31 6.28 7.71E-10 Box Plot
THCA rs6542961 chr2:101109299 C/T LOC285359 chr3:101431278-101432259:+ 0.33 6.49 2.19E-10 Box Plot
THCA rs6542962 chr2:101109389 T/C LOC285359 chr3:101431278-101432259:+ 0.31 6.28 7.71E-10 Box Plot
THCA rs6542963 chr2:101110449 G/C LOC285359 chr3:101431278-101432259:+ 0.31 6.1 2.25E-9 Box Plot
THCA rs6542965 chr2:101124859 G/A LOC285359 chr3:101431278-101432259:+ 0.3 6.05 2.9E-9 Box Plot
THCA rs6542966 chr2:101140614 G/A LOC285359 chr3:101431278-101432259:+ 0.32 6.1 2.18E-9 Box Plot
THCA rs6542968 chr2:101201214 A/T LOC285359 chr3:101431278-101432259:+ 0.27 5.96 4.84E-9 Box Plot
THCA rs6542969 chr2:101201393 T/C LOC285359 chr3:101431278-101432259:+ 0.27 6.03 3.25E-9 Box Plot
THCA rs6543712 chr2:33671165 A/G SMTNL2 chr17:4487294-4511614:+ 0.35 6.03 3.24E-9 Box Plot
THCA rs6549877 chr3:28745139 C/T NPHS1 chr19:36316866-36360189:- 0.29 5.89 7.17E-9 Box Plot
THCA rs6549879 chr3:28745564 T/C NPHS1 chr19:36316866-36360189:- -0.31 -6.16 1.52E-9 Box Plot